Names of Departments offering MSc. Engg. /M.S / M.Phil and Ph.D
| Sr. | Name of Faculty | Name of Department | Name of Postgraduate Degree Program Offered |
| 1. | Natural and Applied Science | Botany | M.Phil. and Ph.D. |
| 2. | Biotechnology | M.Phil. and Ph.D. | |
| 3. | Chemistry | M.Phil. and Ph.D. | |
| 4. | CS&IT | MS | |
| 5. | Mathematics | M.Phil. and Ph.D. | |
| 6. | Physics | M.Phil. and Ph.D. | |
| 7. | Zoology | M.Phil. and Ph.D. | |
| 8. | Engineering | Mechanical Engineering | MS and Ph.D. |
| 9. | Civil Engineering | M.Sc. (Engg.) | |
| 10. | Software Engineering | MS | |
| 11. | Computer System Engg. | M.Sc. (Engg.) | |
| 12. | Electrical Engineering | M.Sc. (Engg.) and Ph.D. | |
| 13. | Social Sciences and Humanities | Education | M.Phil. |
| 14. | Institute of Islamic Studies | M.Phil. | |
| 15. | Economics | M.Phil. | |
| 16. | MUST Business School | MBS | MS |